Here is a list of all class members with links to the classes they belong to:
- g -
- GeneAssociation()
: GeneAssociation
- GeneProduct()
: GeneProduct
- GeneProductAssociation()
: GeneProductAssociation
- GeneProductRef()
: GeneProductRef
- GeneralGlyph()
: GeneralGlyph
- get()
: List
, ListOf
, ListOfCompartmentGlyphs
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfDeletions
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFbcAssociations
, ListOfFluxBounds
, ListOfFluxObjectives
, ListOfFunctionDefinitions
, ListOfFunctionTerms
, ListOfGeneAssociations
, ListOfGeneProducts
, ListOfGraphicalObjects
, ListOfInitialAssignments
, ListOfInputs
, ListOfLayouts
, ListOfLineSegments
, ListOfLocalParameters
, ListOfModelDefinitions
, ListOfObjectives
, ListOfOutputs
, ListOfParameters
, ListOfPorts
, ListOfQualitativeSpecies
, ListOfReactionGlyphs
, ListOfReactions
, ListOfReferenceGlyphs
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesGlyphs
, ListOfSpeciesReferenceGlyphs
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfTextGlyphs
, ListOfTransitions
, ListOfUnitDefinitions
, ListOfUnits
- getActiveObjective()
: FbcModelPlugin
, ListOfObjectives
- getActiveObjectiveId()
: FbcModelPlugin
- getAddDefaultUnits()
: SBMLLevelVersionConverter
- getAdditionalGraphicalObject()
: Layout
- getAllElements()
: BoundingBox
, CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, CubicBezier
, Curve
, Event
, FbcAnd
, FbcModelPlugin
, FbcOr
, FbcReactionPlugin
, FbcSpeciesPlugin
, GeneProductAssociation
, GeneralGlyph
, GraphicalObject
, KineticLaw
, Layout
, LayoutModelPlugin
, LineSegment
, ListOf
, ListOfFunctionTerms
, Model
, Objective
, QualModelPlugin
, Reaction
, ReactionGlyph
, ReferenceGlyph
, SBase
, SBasePlugin
, SBaseRef
, SBMLDocument
, SpeciesReferenceGlyph
, Submodel
, Transition
, UnitDefinition
- getAllElementsFromPlugins()
: SBase
- getAllInstantiatedElements()
: Submodel
- getAllRegisteredPackageNames()
: SBMLExtensionRegistry
- getAncestorOfType()
: SBase
- getAnnotation()
: SBase
- getAnnotationString()
: SBase
- getApplicableValidators()
: SBMLInternalValidator
- getAreaUnits()
: Model
- getArgument()
: FunctionDefinition
- getAssignmentRule()
: Model
- getAssignmentRuleByVariable()
: Model
- getAssociatedSpecies()
: GeneProduct
- getAssociation()
: FbcAnd
, FbcOr
, GeneAssociation
, GeneProductAssociation
- getAttributes()
: XMLToken
- getAttributesLength()
: XMLToken
- getAttrIndex()
: XMLToken
- getAttrName()
: XMLToken
- getAttrPrefix()
: XMLToken
- getAttrPrefixedName()
: XMLToken
- getAttrURI()
: XMLToken
- getAttrValue()
: XMLToken
- getBasePoint1()
: CubicBezier
- getBasePoint2()
: CubicBezier
- getBiologicalQualifierType()
: CVTerm
- getBody()
: FunctionDefinition
- getBoolValue()
: ConversionOption
, ConversionProperties
- getBoundaryCondition()
: Species
- getBoundingBox()
: GraphicalObject
- getBoundingBoxExplicitlySet()
: GraphicalObject
- getBySpecies()
: ListOfInputs
, ListOfOutputs
- getCategory()
: Validator
, XMLError
- getCategoryAsString()
: XMLError
- getCharacter()
: ASTNode
- getCharacters()
: XMLToken
- getCharge()
: FbcSpeciesPlugin
, Species
- getChemicalFormula()
: FbcSpeciesPlugin
- getChild()
: ASTNode
, XMLNode
- getClass()
: ASTNode
- getCoefficient()
: FluxObjective
- getColumn()
: SBase
, XMLError
, XMLToken
- getComparisonCaseSensitivity()
: L3ParserSettings
- getCompartment()
: Model
, QualitativeSpecies
, Reaction
, Species
- getCompartmentGlyph()
: Layout
- getCompartmentId()
: CompartmentGlyph
- getCompartmentType()
: Compartment
, Model
- getConstant()
: Compartment
, Parameter
, QualitativeSpecies
, Species
, SpeciesReference
- getConstraint()
: Model
- getConversionFactor()
: Model
, ReplacedElement
, Species
- getConversionValidators()
: SBMLInternalValidator
- getConverterByIndex()
: SBMLConverterRegistry
- getConverterFor()
: SBMLConverterRegistry
- getCreatedDate()
: ModelHistory
- getCreator()
: ModelHistory
- getCurve()
: GeneralGlyph
, ReactionGlyph
, ReferenceGlyph
, SpeciesReferenceGlyph
- getCurveExplicitlySet()
: GeneralGlyph
, ReactionGlyph
, ReferenceGlyph
, SpeciesReferenceGlyph
- getCurveSegment()
: Curve
- getCVTerm()
: SBase
- getCVTerms()
: SBase
- getDateAsString()
: Date
- getDay()
: Date
- getDefaultLevel()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBMLDocument
- getDefaultPackageVersion()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
- getDefaultProperties()
: CobraToFbcConverter
, CompFlatteningConverter
, FbcToCobraConverter
, FbcV1ToV2Converter
, FbcV2ToV1Converter
, SBMLConverter
, SBMLFunctionDefinitionConverter
, SBMLIdConverter
, SBMLInferUnitsConverter
, SBMLInitialAssignmentConverter
, SBMLLevel1Version1Converter
, SBMLLevelVersionConverter
, SBMLLocalParameterConverter
, SBMLReactionConverter
, SBMLRuleConverter
, SBMLStripPackageConverter
, SBMLUnitsConverter
- getDefaultTerm()
: ListOfFunctionTerms
, Transition
- getDefaultVersion()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBMLDocument
- getDefinitionURL()
: ASTNode
- getDefinitionURLString()
: ASTNode
- getDelay()
: Event
- getDeletion()
: ReplacedElement
, Submodel
- getDenominator()
: ASTNode
, SpeciesReference
- getDepth()
: Dimensions
- getDerivedUnitDefinition()
: Compartment
, Delay
, EventAssignment
, InitialAssignment
, KineticLaw
, LocalParameter
, Parameter
, Rule
, Species
, StoichiometryMath
- getDescription()
: ConversionOption
, ConversionProperties
- getDExplicitlySet()
: Dimensions
- getDimensions()
: BoundingBox
, Layout
- getDimensionsExplicitlySet()
: BoundingBox
, Layout
- getDisabledPlugin()
: SBase
- getDivider()
: CompModelPlugin
- getDocument()
: SBMLConverter
, SBMLValidator
- getDoubleValue()
: ConversionOption
, ConversionProperties
- getElementByMetaId()
: CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, Event
, KineticLaw
, ListOf
, Model
, Reaction
, SBase
, SBasePlugin
, SBaseRef
, SBMLDocument
, Submodel
, Transition
, UnitDefinition
- getElementBySId()
: CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, Event
, KineticLaw
, ListOf
, ListOfEventAssignments
, ListOfInitialAssignments
, ListOfLocalParameters
, ListOfPorts
, ListOfRules
, ListOfUnitDefinitions
, Model
, Reaction
, SBase
, SBasePlugin
, SBaseRef
, SBMLDocument
, Submodel
, Transition
, UnitDefinition
- getElementName()
: Association
, BoundingBox
, Compartment
, CompartmentGlyph
, CompartmentType
, Constraint
, CubicBezier
, Curve
, DefaultTerm
, Delay
, Deletion
, Dimensions
, Event
, EventAssignment
, ExternalModelDefinition
, FbcAnd
, FbcAssociation
, FbcOr
, FluxBound
, FluxObjective
, FunctionDefinition
, FunctionTerm
, GeneAssociation
, GeneProduct
, GeneProductAssociation
, GeneProductRef
, GeneralGlyph
, GraphicalObject
, InitialAssignment
, Input
, KineticLaw
, Layout
, LineSegment
, ListOf
, ListOfCompartmentGlyphs
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfDeletions
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFbcAssociations
, ListOfFluxBounds
, ListOfFluxObjectives
, ListOfFunctionDefinitions
, ListOfFunctionTerms
, ListOfGeneAssociations
, ListOfGeneProducts
, ListOfGraphicalObjects
, ListOfInitialAssignments
, ListOfInputs
, ListOfLayouts
, ListOfLineSegments
, ListOfLocalParameters
, ListOfModelDefinitions
, ListOfObjectives
, ListOfOutputs
, ListOfParameters
, ListOfPorts
, ListOfQualitativeSpecies
, ListOfReactionGlyphs
, ListOfReactions
, ListOfReferenceGlyphs
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesGlyphs
, ListOfSpeciesReferenceGlyphs
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfTextGlyphs
, ListOfTransitions
, ListOfUnitDefinitions
, ListOfUnits
, LocalParameter
, Model
, ModelDefinition
, ModifierSpeciesReference
, Objective
, Output
, Parameter
, Point
, Port
, Priority
, QualitativeSpecies
, Reaction
, ReactionGlyph
, ReferenceGlyph
, ReplacedBy
, ReplacedElement
, Rule
, SBase
, SBaseExtensionPoint
, SBaseRef
, SBMLDocument
, Species
, SpeciesGlyph
, SpeciesReference
, SpeciesReferenceGlyph
, SpeciesType
, StoichiometryMath
, Submodel
, TextGlyph
, Transition
, Trigger
, Unit
, UnitDefinition
- getElementNamespace()
: SBasePlugin
- getEmail()
: ModelCreator
- getEncoding()
: XMLInputStream
- getEnd()
: LineSegment
- getError()
: SBMLDocument
, SBMLErrorLog
, XMLErrorLog
- getErrorId()
: XMLError
- getErrorIdOffset()
: XMLError
- getErrorLog()
: SBMLDocument
, SBMLValidator
, XMLInputStream
- getErrorWithSeverity()
: SBMLDocument
, SBMLErrorLog
- getEvent()
: Model
- getEventAssignment()
: Event
- getExponent()
: ASTNode
, Unit
- getExponentAsDouble()
: Unit
- getExtendedType()
: ASTNode
- getExtension()
: SBMLExtensionRegistry
- getExtentConversionFactor()
: Submodel
- getExtentUnits()
: Model
- getExternalModelDefinition()
: CompSBMLDocumentPlugin
- getFailure()
: SBMLValidator
- getFailures()
: SBMLValidator
, Validator
- getFamilyName()
: ModelCreator
- getFast()
: Reaction
- getFloatValue()
: ConversionOption
, ConversionProperties
- getFluxBound()
: FbcModelPlugin
- getFluxBoundOperation()
: FluxBound
- getFluxBoundsForReaction()
: FbcModelPlugin
- getFluxObjective()
: Objective
- getFormula()
: KineticLaw
, Rule
- getFunctionDefinition()
: Model
- getFunctionTerm()
: Transition
- getGeneAssociation()
: FbcModelPlugin
- getGeneProduct()
: FbcModelPlugin
, GeneProductRef
- getGeneProductAssociation()
: FbcReactionPlugin
- getGeneProductByLabel()
: FbcModelPlugin
- getGeneralGlyph()
: Layout
- getGivenName()
: ModelCreator
- getGlyphId()
: ReferenceGlyph
- getGraphicalObjectId()
: TextGlyph
- getHasOnlySubstanceUnits()
: Species
- getHeight()
: Dimensions
- getHost()
: SBMLUri
- getHour()
: Date
- getHoursOffset()
: Date
- getId()
: ASTNode
, BoundingBox
, Compartment
, CompartmentType
, Deletion
, Dimensions
, Event
, ExternalModelDefinition
, FluxBound
, FluxObjective
, FunctionDefinition
, GeneAssociation
, GeneProduct
, GeneProductAssociation
, GeneProductRef
, GraphicalObject
, Input
, Layout
, Model
, Objective
, Output
, Parameter
, Point
, Port
, QualitativeSpecies
, Reaction
, SimpleSpeciesReference
, Species
, SpeciesType
, Submodel
, Transition
, UnitDefinition
, VConstraint
- getIdRef()
: SBaseRef
- getIndex()
: XMLAttributes
, XMLNamespaces
, XMLNode
- getIndexByPrefix()
: XMLNamespaces
- getIndexForReferenceGlyph()
: GeneralGlyph
- getIndexForSpeciesReferenceGlyph()
: ReactionGlyph
- getIndexForSubGlyph()
: GeneralGlyph
- getInitialAmount()
: Species
- getInitialAssignment()
: Model
- getInitialAssignmentBySymbol()
: Model
- getInitialConcentration()
: Species
- getInitialLevel()
: QualitativeSpecies
- getInitialValue()
: Trigger
- getInput()
: Transition
- getInputBySpecies()
: Transition
- getInstance()
: SBMLConverterRegistry
, SBMLExtensionRegistry
, SBMLResolverRegistry
- getInstantiation()
: Submodel
- getInteger()
: ASTNode
- getIntValue()
: ConversionOption
, ConversionProperties
- getItemTypeCode()
: ListOf
, ListOfCompartmentGlyphs
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfDeletions
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFbcAssociations
, ListOfFluxBounds
, ListOfFluxObjectives
, ListOfFunctionDefinitions
, ListOfFunctionTerms
, ListOfGeneAssociations
, ListOfGeneProducts
, ListOfGraphicalObjects
, ListOfInitialAssignments
, ListOfInputs
, ListOfLayouts
, ListOfLineSegments
, ListOfLocalParameters
, ListOfModelDefinitions
, ListOfObjectives
, ListOfOutputs
, ListOfParameters
, ListOfPorts
, ListOfQualitativeSpecies
, ListOfReactionGlyphs
, ListOfReactions
, ListOfReferenceGlyphs
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesGlyphs
, ListOfSpeciesReferenceGlyphs
, ListOfSpeciesReferences
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfTextGlyphs
, ListOfTransitions
, ListOfUnitDefinitions
, ListOfUnits
- getKey()
: ConversionOption
- getKind()
: Unit
- getKineticLaw()
: Reaction
- getL1TypeCode()
: Rule
- getLabel()
: GeneProduct
- getLayout()
: LayoutModelPlugin
- getLeftChild()
: ASTNode
- getLength()
: XMLAttributes
, XMLNamespaces
- getLengthUnits()
: Model
- getLevel()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLNamespaces
- getLine()
: SBase
, XMLError
, XMLToken
- getListCreators()
: ModelHistory
- getListModifiedDates()
: ModelHistory
- getListNestedCVTerms()
: CVTerm
- getListOfAdditionalGraphicalObjects()
: Layout
- getListOfAssociations()
: FbcAnd
, FbcOr
- getListOfCompartmentGlyphs()
: Layout
- getListOfCompartments()
: Model
- getListOfCompartmentTypes()
: Model
- getListOfConstraints()
: Model
- getListOfCurveSegments()
: Curve
- getListOfDeletions()
: Submodel
- getListOfEventAssignments()
: Event
- getListOfEvents()
: Model
- getListOfExternalModelDefinitions()
: CompSBMLDocumentPlugin
- getListOfFluxBounds()
: FbcModelPlugin
- getListOfFluxObjectives()
: Objective
- getListOfFunctionDefinitions()
: Model
- getListOfFunctionTerms()
: Transition
- getListOfGeneAssociations()
: FbcModelPlugin
- getListOfGeneProducts()
: FbcModelPlugin
- getListOfInitialAssignments()
: Model
- getListOfInputs()
: Transition
- getListOfLayouts()
: LayoutModelPlugin
- getListOfLocalParameters()
: KineticLaw
- getListOfModelDefinitions()
: CompSBMLDocumentPlugin
- getListOfModifiers()
: Reaction
- getListOfNodes()
: ASTNode
- getListOfObjectives()
: FbcModelPlugin
- getListOfOutputs()
: Transition
- getListOfParameters()
: KineticLaw
, Model
- getListOfPorts()
: CompModelPlugin
- getListOfProducts()
: Reaction
- getListOfQualitativeSpecies()
: QualModelPlugin
- getListOfReactants()
: Reaction
- getListOfReactionGlyphs()
: Layout
- getListOfReactions()
: Model
- getListOfReferenceGlyphs()
: GeneralGlyph
- getListOfReplacedElements()
: CompSBasePlugin
- getListOfRules()
: Model
- getListOfSpecies()
: Model
- getListOfSpeciesGlyphs()
: Layout
- getListOfSpeciesReferenceGlyphs()
: ReactionGlyph
- getListOfSpeciesTypes()
: Model
- getListOfSubGlyphs()
: GeneralGlyph
- getListOfSubmodels()
: CompModelPlugin
- getListOfTextGlyphs()
: Layout
- getListOfTransitions()
: QualModelPlugin
- getListOfUnitDefinitions()
: Model
- getListOfUnits()
: UnitDefinition
- getLocalParameter()
: KineticLaw
- getLocationURI()
: SBMLDocument
- getLowerFluxBound()
: FbcReactionPlugin
- getMantissa()
: ASTNode
- getMath()
: Constraint
, Delay
, EventAssignment
, FunctionDefinition
, FunctionTerm
, InitialAssignment
, KineticLaw
, Priority
, Rule
, StoichiometryMath
, Trigger
- getMaxLevel()
: QualitativeSpecies
- getMd5()
: ExternalModelDefinition
- getMessage()
: Constraint
, XMLError
- getMessageString()
: Constraint
- getMetaId()
: SBase
- getMetaIdRef()
: GraphicalObject
, SBaseRef
- getMinute()
: Date
- getMinutesOffset()
: Date
- getModel()
: CompSBMLDocumentPlugin
, L3ParserSettings
, SBase
, SBMLDocument
, SBMLValidator
- getModelDefinition()
: CompSBMLDocumentPlugin
- getModelHistory()
: SBase
- getModelQualifierType()
: CVTerm
- getModelRef()
: ExternalModelDefinition
, Submodel
- getModifiedDate()
: ModelHistory
- getModifier()
: Reaction
- getModifierSpeciesReference()
: Model
- getMonth()
: Date
- getMultiplier()
: Unit
- getName()
: ASTNode
, Compartment
, CompartmentType
, CompExtension
, Deletion
, Event
, ExternalModelDefinition
, FbcExtension
, FluxBound
, FluxObjective
, FunctionDefinition
, GeneProduct
, GeneProductAssociation
, GeneProductRef
, Input
, Layout
, LayoutExtension
, Model
, Objective
, Output
, Parameter
, Port
, QualExtension
, QualitativeSpecies
, Reaction
, SBMLConverter
, SBMLExtension
, SimpleSpeciesReference
, Species
, SpeciesType
, Submodel
, Transition
, UnitDefinition
, XMLAttributes
, XMLToken
, XMLTriple
- getNamespaceIndex()
: XMLToken
- getNamespaceIndexByPrefix()
: XMLToken
- getNamespacePrefix()
: XMLToken
- getNamespaces()
: SBase
, SBMLDocument
, SBMLNamespaces
, XMLToken
- getNamespacesLength()
: XMLToken
- getNamespaceURI()
: XMLToken
- getNestedCVTerm()
: CVTerm
- getNotes()
: SBase
- getNotesString()
: SBase
- getNumAdditionalGraphicalObjects()
: Layout
- getNumArguments()
: FunctionDefinition
- getNumAssociations()
: Association
, FbcAnd
, FbcOr
- getNumAttributes()
: XMLAttributes
- getNumChildren()
: ASTNode
, XMLNode
- getNumCompartmentGlyphs()
: Layout
- getNumCompartments()
: Model
- getNumCompartmentTypes()
: Model
- getNumConstraints()
: Model
- getNumConverters()
: SBMLConverterRegistry
- getNumCreators()
: ModelHistory
- getNumCurveSegments()
: Curve
- getNumCVTerms()
: SBase
- getNumDeletions()
: Submodel
- getNumDisabledPlugins()
: SBase
- getNumerator()
: ASTNode
- getNumErrors()
: SBMLDocument
, XMLErrorLog
- getNumEventAssignments()
: Event
- getNumEvents()
: Model
- getNumExtension()
: SBMLExtensionRegistry
- getNumExternalModelDefinitions()
: CompSBMLDocumentPlugin
- getNumFailsWithSeverity()
: SBMLErrorLog
- getNumFailures()
: SBMLValidator
- getNumFbcAssociations()
: ListOfFbcAssociations
- getNumFluxBounds()
: FbcModelPlugin
- getNumFluxObjectives()
: ListOfFluxObjectives
, Objective
- getNumFunctionDefinitions()
: Model
- getNumFunctionTerms()
: Transition
- getNumGeneAssociations()
: FbcModelPlugin
- getNumGeneProducts()
: FbcModelPlugin
, ListOfGeneProducts
- getNumGeneralGlyphs()
: Layout
- getNumInitialAssignments()
: Model
- getNumInputs()
: Transition
- getNumLayouts()
: LayoutModelPlugin
- getNumLocalParameters()
: KineticLaw
- getNumModelDefinitions()
: CompSBMLDocumentPlugin
- getNumModifiedDates()
: ModelHistory
- getNumModifiers()
: Reaction
- getNumNamespaces()
: XMLNamespaces
- getNumNestedCVTerms()
: CVTerm
- getNumObjectives()
: FbcModelPlugin
, ListOfObjectives
- getNumOfSBasePlugins()
: SBMLExtension
- getNumOfSupportedPackageURI()
: SBasePluginCreatorBase
, SBMLExtension
- getNumOptions()
: ConversionProperties
- getNumOutputs()
: Transition
- getNumParameters()
: KineticLaw
, Model
- getNumPlugins()
: SBase
- getNumPorts()
: CompModelPlugin
- getNumProducts()
: Reaction
- getNumQualitativeSpecies()
: QualModelPlugin
- getNumReactants()
: Reaction
- getNumReactionGlyphs()
: Layout
- getNumReactions()
: Model
- getNumReferenceGlyphs()
: GeneralGlyph
- getNumReferents()
: ReplacedElement
, SBaseRef
- getNumRegisteredPackages()
: SBMLExtensionRegistry
- getNumReplacedElements()
: CompSBasePlugin
- getNumResolvers()
: SBMLResolverRegistry
- getNumResources()
: CVTerm
- getNumRules()
: Model
- getNumSemanticsAnnotations()
: ASTNode
- getNumSpecies()
: Model
- getNumSpeciesGlyphs()
: Layout
- getNumSpeciesReferenceGlyphs()
: ReactionGlyph
- getNumSpeciesTypes()
: Model
- getNumSpeciesWithBoundaryCondition()
: Model
- getNumSubGlyphs()
: GeneralGlyph
- getNumSubmodels()
: CompModelPlugin
- getNumTextGlyphs()
: Layout
- getNumTransitions()
: QualModelPlugin
- getNumUnitDefinitions()
: Model
- getNumUnits()
: UnitDefinition
- getObjective()
: FbcModelPlugin
- getObjectiveType()
: Objective
- getOffset()
: Unit
- getOperation()
: FluxBound
- getOperatorName()
: ASTNode
- getOption()
: ConversionProperties
- getOrder()
: CompartmentGlyph
- getOrganisation()
: ModelCreator
- getOrganization()
: ModelCreator
- getOriginOfTextId()
: TextGlyph
- getOutput()
: Transition
- getOutputBySpecies()
: Transition
- getOutputLevel()
: Output
- getOutside()
: Compartment
- getPackage()
: XMLError
- getPackageName()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBase
, SBaseExtensionPoint
, SBasePlugin
, SBMLExtensionNamespaces< SBMLExtensionType >
, SBMLNamespaces
- getPackageRequired()
: SBMLDocument
- getPackageToStrip()
: SBMLStripPackageConverter
- getPackageVersion()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLExtensionNamespaces< SBMLExtensionType >
- getParameter()
: KineticLaw
, Model
- getParentSBMLObject()
: ASTNode
, SBase
, SBasePlugin
- getParseAvogadroCsymbol()
: L3ParserSettings
- getParseCollapseMinus()
: L3ParserSettings
- getParseLog()
: L3ParserSettings
- getParseUnits()
: L3ParserSettings
- getPath()
: SBMLUri
- getPersistent()
: Trigger
- getPkgRequired()
: SBMLDocument
- getPlugin()
: SBase
- getPort()
: CompModelPlugin
- getPortRef()
: SBaseRef
- getPosition()
: BoundingBox
- getPositionExplicitlySet()
: BoundingBox
- getPrecedence()
: ASTNode
- getPrefix()
: SBase
, SBasePlugin
, XMLAttributes
, XMLNamespaces
, XMLToken
, XMLTriple
- getPrefixedName()
: XMLAttributes
, XMLTriple
- getPriority()
: Event
- getProduct()
: Reaction
- getProperties()
: SBMLConverter
- getQualifierType()
: CVTerm
- getQualitativeSpecies()
: Input
, Output
, QualModelPlugin
- getQuery()
: SBMLUri
- getRateRule()
: Model
- getRateRuleByVariable()
: Model
- getReactant()
: Reaction
- getReaction()
: FluxBound
, FluxObjective
, GeneAssociation
, Model
- getReactionGlyph()
: Layout
- getReactionId()
: ReactionGlyph
- getReal()
: ASTNode
- getReference()
: Association
- getReferencedElement()
: SBaseRef
- getReferencedElementFrom()
: ReplacedElement
, SBaseRef
- getReferencedModel()
: ExternalModelDefinition
- getReferenceGlyph()
: GeneralGlyph
- getReferenceId()
: GeneralGlyph
, ReferenceGlyph
- getRegisteredPackageName()
: SBMLExtensionRegistry
- getRegisteredPackageNames()
: SBMLExtensionRegistry
- getReplacedBy()
: CompSBasePlugin
- getReplacedElement()
: CompSBasePlugin
- getRequired()
: SBMLDocumentPlugin
- getResolverByIndex()
: SBMLResolverRegistry
- getResourceBiologicalQualifier()
: SBase
- getResourceModelQualifier()
: SBase
- getResources()
: CVTerm
- getResourceURI()
: CVTerm
- getResultLevel()
: DefaultTerm
, FunctionTerm
- getReversible()
: Reaction
- getRightChild()
: ASTNode
- getRole()
: ReferenceGlyph
, SpeciesReferenceGlyph
- getRoleString()
: SpeciesReferenceGlyph
- getRule()
: Model
- getRuleByVariable()
: Model
- getSBaseRef()
: SBaseRef
- getSBMLDocument()
: SBase
, SBasePlugin
- getSBMLErrMsg()
: SBMLConstructorException
- getSBMLExtensionNamespaces()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBMLExtension
- getSBMLNamespaces()
: XMLInputStream
, XMLOutputStream
- getSBMLNamespaceURI()
: SBMLNamespaces
- getSBOTerm()
: SBase
- getSBOTermAsURL()
: SBase
- getSBOTermID()
: SBase
- getScale()
: Unit
- getScheme()
: SBMLUri
- getSecond()
: Date
- getSemanticsAnnotation()
: ASTNode
- getSeverity()
: VConstraint
, XMLError
- getSeverityAsString()
: XMLError
- getSeverityOverride()
: XMLErrorLog
- getShortMessage()
: XMLError
- getSign()
: Input
- getSignOffset()
: Date
- getSize()
: Compartment
, List
- getSource()
: ExternalModelDefinition
- getSpatialDimensions()
: Compartment
- getSpatialDimensionsAsDouble()
: Compartment
- getSpatialSizeUnits()
: Species
- getSpecies()
: Model
, SimpleSpeciesReference
- getSpeciesGlyph()
: Layout
- getSpeciesGlyphId()
: SpeciesReferenceGlyph
- getSpeciesId()
: SpeciesGlyph
- getSpeciesReference()
: Model
- getSpeciesReferenceGlyph()
: ReactionGlyph
- getSpeciesReferenceId()
: SpeciesReferenceGlyph
- getSpeciesType()
: Model
, Species
- getStandardMessage()
: XMLError
- getStart()
: LineSegment
- getStoichiometry()
: SpeciesReference
- getStoichiometryMath()
: SpeciesReference
- getStrict()
: FbcModelPlugin
, FbcV1ToV2Converter
- getStringFromTypeCode()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBMLExtension
- getStyle()
: ASTNode
- getSubGlyph()
: GeneralGlyph
- getSubmodel()
: CompModelPlugin
- getSubmodelRef()
: Replacing
- getSubstanceConversionFactor()
: Submodel
- getSubstanceUnits()
: KineticLaw
, Model
, Species
- getSupportedNamespaces()
: SBMLNamespaces
- getSupportedPackageURI()
: SBasePluginCreatorBase
, SBMLExtension
- getSymbol()
: InitialAssignment
- getTargetExtensionPoint()
: SBasePluginCreatorBase
- getTargetLevel()
: SBMLLevelVersionConverter
- getTargetNamespaces()
: ConversionProperties
, SBMLConverter
- getTargetPackageName()
: SBasePluginCreatorBase
- getTargetSBMLTypeCode()
: SBasePluginCreatorBase
- getTargetVersion()
: SBMLLevelVersionConverter
- getText()
: TextGlyph
- getTextGlyph()
: Layout
- getThresholdLevel()
: Input
- getTimeConversionFactor()
: Submodel
- getTimeUnits()
: Event
, KineticLaw
, Model
- getTransformer()
: CompModelPlugin
- getTransition()
: QualModelPlugin
- getTransitionEffect()
: Input
, Output
- getTrigger()
: Event
- getType()
: Association
, ASTNode
, ConversionOption
, ConversionProperties
, Objective
, Rule
- getTypeCode()
: Association
, BoundingBox
, Compartment
, CompartmentGlyph
, CompartmentType
, Constraint
, CubicBezier
, Curve
, DefaultTerm
, Delay
, Deletion
, Dimensions
, Event
, EventAssignment
, ExternalModelDefinition
, FbcAnd
, FbcAssociation
, FbcOr
, FluxBound
, FluxObjective
, FunctionDefinition
, FunctionTerm
, GeneAssociation
, GeneProduct
, GeneProductAssociation
, GeneProductRef
, GeneralGlyph
, GraphicalObject
, InitialAssignment
, Input
, KineticLaw
, Layout
, LineSegment
, ListOf
, ListOfFbcAssociations
, ListOfFluxObjectives
, ListOfGeneProducts
, ListOfObjectives
, LocalParameter
, Model
, ModelDefinition
, ModifierSpeciesReference
, Objective
, Output
, Parameter
, Point
, Port
, Priority
, QualitativeSpecies
, Reaction
, ReactionGlyph
, ReferenceGlyph
, ReplacedBy
, ReplacedElement
, Rule
, SBase
, SBaseExtensionPoint
, SBaseRef
, SBMLDocument
, Species
, SpeciesGlyph
, SpeciesReference
, SpeciesReferenceGlyph
, SpeciesType
, StoichiometryMath
, Submodel
, TextGlyph
, Transition
, Trigger
, Unit
, UnitDefinition
- getUnit()
: UnitDefinition
- getUnitDefinition()
: Model
- getUnitRef()
: SBaseRef
- getUnits()
: ASTNode
, Compartment
, Parameter
, Rule
, Species
- getUpperFluxBound()
: FbcReactionPlugin
- getURI()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLExtensionNamespaces< SBMLExtensionType >
, SBMLNamespaces
- getUri()
: SBMLUri
- getURI()
: XMLAttributes
, XMLNamespaces
, XMLToken
, XMLTriple
- getUserData()
: ASTNode
, ElementFilter
, SBase
- getUseValuesFromTriggerTime()
: Event
- getValidityFlag()
: SBMLLevelVersionConverter
- getValue()
: ASTNode
, ConversionOption
, ConversionProperties
, FluxBound
, Parameter
, XMLAttributes
- getVariable()
: EventAssignment
, Rule
- getVersion()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
, SBase
, SBasePlugin
, SBMLExtension
, SBMLNamespaces
, XMLInputStream
- getVolume()
: Compartment
- getVolumeUnits()
: Model
- getWidth()
: Dimensions
- getXmlnsL2()
: LayoutExtension
- getXmlnsL3V1V1()
: CompExtension
, FbcExtension
, LayoutExtension
, QualExtension
- getXmlnsL3V1V2()
: FbcExtension
- getXmlnsXSI()
: LayoutExtension
- getXOffset()
: Point
- getYear()
: Date
- getYOffset()
: Point
- getZOffset()
: Point
- getZOffsetExplicitlySet()
: Point
- GraphicalObject()
: GraphicalObject